Wednesday, 23 January 2013

Alpha males and adventurous human females : gender and synthetic genomics

In May of 2010, two influential Science papers changed the way that we think about the past and future of genomes. The decoding of the Neandertal genome showed that humans and Neandertals interbred some time before Neandertals went extinct some 30,000 years ago. A couple weeks later, the J. Craig Venter Institute announced their chemical synthesis of a complete bacterial genome and its ?booting up? in a closely related cell. The coincidence of the announcement of ancient and synthetic genomes, as well as the recent publication of technologies for large scale bacterial genome engineering from George Church?s lab led some people to ask whether it would be possible to clone Neandertals by a combination of gene synthesis, human genome editing, and stem cell cloning.

While the New Scientist article about the implications of the Neandertal genome was pessimistic on the short-term prospect of ?resurrecting? Neandertals, George Church himself has more recently made news by suggesting how such a future scenario might work in his recent book Regenesis: How Synthetic Biology Will Reinvent Nature and Ourselves. In the book?s introduction, Church (with science writer Ed Regis) writes:

You?d start with a stem cell genome from a human adult and gradually reverse-engineer it into the Neanderthal genome or a reasonably close equivalent. These stem cells cal produce tissues and organs. If society becomes comfortable with cloning and sees value in true human diversity, then the whole Neanderthal creature itself could be cloned by a surrogate mother chimp?or by an extremely adventurous human female.

While the news storm has made it seem like this is an active area of research in the Church lab, George has been clear that his statements were meant to spark discussion about the myriad social and ethical aspects of such an endeavor given its possible technical feasibility, not to recruit any surrogate mothers to a study.

Ethical concerns have been paramount in the development of reproductive technologies, mammalian cloning, stem cell biology, genomics, and synthetic biology in recent decades, and the question of Neandertal resurrection would certainly engage with the ethical concerns arising from all of these fields. For now, I want to address just one very small social aspect of Church?s statement, and how it affects the practice of synthetic biology. For Church, the prospect of cloning Neandertals is in large part about diversity. In the Der Spiegel interview, Church contradicts the interviewer when asked whether it would be ethical to create a Neandertal for the sake of curiosity. Church says:

Well, curiosity may be part of it, but it?s not the most important driving force. The main goal is to increase diversity. The one thing that is bad for society is low diversity. This is true for culture or evolution, for species and also for whole societies. If you become a monoculture, you are at great risk of perishing. Therefore the recreation of Neanderthals would be mainly a question of societal risk avoidance.

For such a technological commitment to human diversity, Church?s book tells a very different story about diversity amongst the practitioners of synthetic biology. Of the approximately 160 names mentioned in the book?s index, only 10% are the names of women, and only one of those names is a practicing academic synthetic biologist, involved in the founding of one of Church?s many startup companies. The ?extremely adventurous human female? mentioned in the context of Neandertal surrogacy (and easily replaceable by a chimpanzee) therefore represents a significant percentage of all the women mentioned in the whole book.

This observation points at not only the continuing lack of women and minorities in science, engineering, and technology, but at perhaps a deeper problem about the culturally perceived character of the engineer and the growing mythology surrounding well-known synthetic biologists. Craig Venter, a major figure in genomics, both natural and synthetic, and no stranger to the myth-making of scientists, wrote about how he sees himself in response to the 2013 Edge question ?What *Should* We Be Worried About?:

As a scientist, an optimist, an atheist and an alpha male I don?t worry. As a scientist I explore and seek understanding of the world (s) around me and in me. As an optimist I wake up each morning with a new start on all my endeavors with hope and excitement. As an atheist I know I only have the time between my birth and my death to accomplish something meaningful. As an alpha male I believe I can and do work to solve problems and change the world.

As we write the history of synthetic biology and the pioneering scientists and engineers who are rewriting the code of life, it is these ?alpha males? who are written as the adventurous creators of new life forms and ?adventurous females? that are the anonymous vessels for their DNA-based creations. For Venter?s ?Synthia,? the chemically synthesized genome came to be seen as ?life,? while the host cell whose membrane, cytoplasm, and proteins ?booted up? the inert DNA is but the ?chassis.? In the potential design of a Neandertal baby, a human being is the ?chassis? organism, the ?donor cell? for a transplanted genome, the unpredictable host context that can confound synthetic biology designs.

In such scientific imaginings we get futuristic versions of some very retrograde cultural ideas about gender. While I know that these men don?t actually think of the women in their lives and in their labs as simply vessels for DNA (some of my best friends are male synthetic biologists!), I also know that leaving these kinds of statements unexamined can lead to an environment that makes it harder for women working in these labs, harder for women to be chosen as speakers at quantitative synthetic biology conferences, and harder for women to be promoted and advance in their field. Before we discuss the potential of cloned Neandertals to boost human diversity, we must first consider our role in boosting the diversity of our labs, companies, faculty, and conferences with the humans that actually exist.

Source: http://rss.sciam.com/click.phdo?i=845b40d1f2e152610bdf516864dfeae7

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Tuesday, 22 January 2013

Tax levies: Large print giveth, small print taketh away ? Business ...

The aftermath of the Great Recession may very well be read in an increase in the number of tax levies on wages, as employees scrimped on their taxes to pay for other things. The IRS isn?t sympathetic, and that?s bad news for you. Tax levies, with their different withholding and remittance rules and paperwork requirements are an inconvenience for already overworked Payroll departments.

Liability lessons

Employees who have shorted the IRS may not be too happy about having to pony up on the back end through tax levies. A couple of recent cases reaffirm that you aren?t liable for withholding under a tax levy.

  • A federal appellate court ruled that an employer wasn?t liable to an employee for honoring a tax levy. Among the employee?s more colorful allegations against his employer were that it breached its fiduciary duty, committed fraud and negligence, intentionally inflicted emotional distress and tortuously interfered with contract and business relationships. (Hughes v. Chevron Phillips Chemical Company LP, No. 11-10698, 5th Cir., 2012)

  • A federal trial court dismissed an employee?s lawsuit seeking $445,000 in damages from his employer for honoring a tax levy. Employee?s allegations: He never agreed to withholding under the levy, and, by withholding, the employer breached its at-will contract with him; the cash damages were to compensate him for lost wages, lost investments, loss of the ability to pay normal bills and mental anguish associated with those losses. (Al-Sharif v. Epes Transport System, Inc., No. 1:11-cv-00037, D.C. S. Ga., 2012)

PAYROLL PRACTICE TIP: As these cases show, employees (and their lawyers) can be pretty creative. Regardless of the frivolous nature of these lawsuits, the company and individual employees will still be forced to hire attorneys and go to court to have such cases dismissed. Advice: Consider ?adopting a policy under which employees will be terminated for bringing frivolous lawsuits.

How tax levies work

The IRS will send you Form 668-W, which contains instructions for you and the employee. It also provides levy tables, which are inflation-adjusted every year, from which you figure the employee?s take-home pay.

Tax levies take priority over all other garnishments. Exceptions: If the employee?s wages are also subject to a state tax levy or an order for child support withholding, and those levies were served first, they are honored first. If all levies are served simultaneously, the federal levy is honored first.

To implement a levy, take these steps.

  1. Figure the employee?s regular income tax withholding, plus pre-levy voluntary deductions. Watch it: New deductions, or an increase in existing deductions, usually aren?t allowed. What?s OK: increases in 401(k) deductions that are based on salary increases. What?s not OK: increases to repay a company loan (the original deduction to repay the loan is OK).

  2. To arrive at the employee?s take-home pay, use the 2013 tables for levies beginning this year. The difference between the amount left after regular withholding and the exempt amount, as shown in the levy tables, is the amount you send to the IRS to satisfy the levy. If you?re honoring a levy from a prior year, continue using the tables that were in effect for that year, unless the employee changes the number of exemptions or updates his/her parts of Form 668-W for 2013. In that case, use the 2013 tables to recalculate the exempt amount. The IRS publishes these tables in Pub. 1494, which is available on the IRS? website.

  3. You can send one check to the IRS for multiple tax levies, but you must separately list the details of each employee?s levy. Include a phone number that the IRS can use if it has questions.

Take it. It?s yours

An employee who chooses not to incur the wrath of the IRS and the Payroll department can stave off a levy by entering into a voluntary withholding agreement with the IRS. Of course, any voluntary agreement to withhold back taxes requires the employer?s consent. If you agree, you and the employee complete and file Form 2159 with the IRS.

FYI: As with levies, withholding is separate from regular income tax withholding. Once withholding begins, it continues until the IRS provides a release.

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Little-known Technologies: Big Impact on Business | -


zioskA few weeks ago I had a British experience at Pizzeria Uno's near Boston. No, they weren't serving fish and chips. On each table at the restaurant was a little wireless device. When I was done eating I paid for my meal by using the device. No server was involved. I say this was a British experience because every time I visit my wife's family in London. my kids drag us to the local Pizza Express restaurant. After receiving our bill of $100 for a pizza dinner (yes, London is expensive) we pay for it like all Londoners do: via a handheld device brought to our table by our server. I always wondered why this type of mobile payment technology isn't more widespread here in the U.S. Well, I can wonder no more. It's here. And it's just one little technology that's going to change millions of small businesses.

The device I used is made by Ziosk. "Ziosk is currently servicing about 5 million guests per month. Over the next 12 months. we will service 100 million guests and in the next 24 months we will be servicing 100 million guests per month." This is per John Regal, the company's chief marketing pfficer. By using the Ziosk's 7-in. touch screen, guests can check into Facebook or the restaurant's loyalty program, view the menu, order food and drinks, play games, read the news, view movie trailers and pay their check. And unlike my family's beloved Pizza Express in London, a server doesn't have to bring the device to the table - it's there to play with for the entire meal.

The company, which currently employs 48 people, is in the process of raising $10 million from private investors and is focusing on the casual dining industry. According to Regal, there are 168,000 of these restaurants in the U.S. and they serve over 20 billion meals per year.

Why not create a smartphone or tablet app for your customers instead? Ziosk is more secure, costs a lot less than building your own application and...is more fun. "Future applications will enable guests to interact with the Ziosk via their mobile phone, for example, using it as a game controller," says Regal. "Or, if the guest has an NFC (near field communications) enabled phone, they can tap the Ziosk to pay for their meal or to receive special offers to be added to their e-wallet."

Any business with a point-of-sale system, which pretty much means any small business in the retail or restaurant industry, will be using devices like the ones made by Ziosk within the next few years.

Of course, it would be a lot easier if their data was accurate and stored in one place too. This is also happening. Quietly, a little company called Locu has built up a database of over half a million businesses in the restaurant industry. And now they're turning to other small businesses like nail salons and beauty shops and spas. Your business might already be in their database. Should you care? According to the company, you should.

"Maybe your menu changes daily or weekly, or maybe you have soup or sandwich of the day, or maybe you find out at the very last minute that there won't be any tomatoes for your famous marinara-what do you do? Call your Webmaster? Manually update your menu? Then post your changes online site by site? With Locu, you use your online dashboard to make changes simply and quickly. It's all in one place and it's super easy to use."

TechCrunch reported that the company recently debuted programming tools which will allow developers to pull in menu, pricing and hours of operation information from local restaurants into their applications. Already "several hundred companies" are now using these tools, including a "few big-name partners."

Why am I excited about Locu? Say you're running a restaurant and want to change your menu. Or offer a special happy hour. Or say you own a pharmacy or a nail salon or a gas station or a pizza shop and you want to add a new item, change a price, announce a contest or start a new delivery service.

Instead of figuring out how to do this on your own, you update Locu's database. Instead of your own tangled chaos of data stored in a spreadsheet/website/database created for you by that high school kid last summer you now have a single, uniform, consistent repository of data that will then be familiar to a network of programmers. With so many small businesses trying to figure out how to use the web and social media to attract new customers and grow, Locu (at least in my opinion), has figured out the answer: provide a single database of pertinent information that the customer needs and make sure it's accurate. Then open it up for smart programmers (like the people at Ziosk maybe?) to access and build custom applications.

We're just starting to use the cloud. Except it's a mess. Because there's not just one "cloud." There's millions of little databases and websites stored throughout the cloud. Companies like Locu are beginning to bring all this data together for good, low-cost use.

And what about the countless small businesses that use photography to sell their products and services? Landscapers proudly take photos of their jobs to display to their customers. Roofers and contractors often take before-and-after pictures to demonstrate the effectiveness of their work. Many of us use our cameras to take snap shots of our employees, our offices, ourselves in action and we're using these photos on our websites, brochures and other marketing materials.

Well, that's all about to change. A new camera is hitting the stores shortly. It's called Lytro and it uses light field technology. At $399, the Lytro camera is the first consumer camera to capture the entire light field. No other conventional camera does that today. So, why should you care? According to the company, when you capture all the light traveling in every direction in every point in space, you can do some pretty cool things like focusing a picture after you take it and creating interactive, living pictures. When you share those living pictures online, your friends, family members or customers can refocus them too, right in Facebook, in Twitter or on a blog or website. These living pictures are highly engaging, fun to share and easy to create. And it's a whole new way for your customers to engage with your business.

How will businesses benefit? "Simple," says the company's Vice President of Marketing Kira Wampler. "Business owners who want to create interactive content to engage customers, prospects and fans online will enjoy using the Lytro camera. We've seen bakeries create re-focusable cupcake pictures and aquarium aficionados take amazing fish shots. Beyond small business, there are many industrial, commercial and scientific applications for light field technology." Light field technology, in my opinion, will be a game changer for how we show our products and services to our customers and enable them to interact with our companies differently.

Keep an eye on Lytro. And Locu. And Ziosk. You've probably never heard of them before. But these are three little technologies that may have a big impact on your business.

?

?

Source: http://www.theprogressiveaccountant.com/tech-tips/little-known-technologies-big-impact-on-business.html

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Solid Web Marketing Advice For Anyone! | Goozleology Internet ...

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Monday, 21 January 2013

Mature T cells can switch function to better tackle infection

Jan. 20, 2013 ? Helper cells of the immune system can switch to become killer cells in the gut. The fate of mature T lymphocytes might be a lot more flexible than previously thought. New research from the RIKEN Center for Allergy and Immunology (RCAI) in Japan and La Jolla Institute for Allergy and Immunology (LIAI) in the USA shows for the first time that mature CD4+ helper T lymphocytes can be re-programed to become killer-like CD8+ T lymphocytes and gain killing functions.

The findings are reported January 20 in the journal Nature Immunology, by a team of researchers led by Ichiro Taniuchi from RIKEN and Hilde Cheroutre from La Jolla. The team show using transgenic mice that mature CD4+ helper T lymphocytes that have lost the transcription factor ThPOK express genes specific to CD8+ killer T lymphocytes upon exposure to a specific environmental stimulation such as the gut. This turns them into killer cells that might act to control infection.

CD4+ helper T lymphocytes and CD8+ killer T lymphocytes are important players in the body's defense mechanism against infection. CD4+ helper T lymphocytes normally only assist other cells of the immune system during an infection, whereas CD8+ killer T cells are the main actors in the elimination of infected cells.

Both types of cells are generated in the thymus, where their early precursors develop first into cells bearing both CD4 and CD8 markers. These CD4+ CD8+ cells then differentiate into cells bearing either the CD4 or CD8 marker and take on either a helper (CD4+) or killer (CD8+) fate.

The transcription factor ThPOK is known to play a crucial role in the fate determination of T lymphocytes in the thymus. It represses genes specific to CD8+ cells in precursors of helper T cells and prevents these cells from differentiating into CD8+ killer cells. The expression of ThPOK continues in mature CD4+ helper T cells and is repressed in mature CD8+ cells.

In the study, Taniuchi, Cheroutre and colleagues show that upon deactivation of ThPOK, mature CD4+ T cells revert back to bearing both CD4 and CD8 markers in the mouse intestine. By analyzing RNA extracted from ThPOK-negative CD4+ CD8+ cells, the researchers demonstrate that the cells express various CD8+ cell-specific genes encoding for cytolitic proteins and that they have effectively differentiated into CD8+ killer T cells.

The authors conclude: "The unexpected plasticity of mature CD4+ T cells to differentiate into CD8+ cytolitic cells expands the functional capabilities of CD4+ T cells. It is possible that CD4+ T cells are also involved in direct protective functions and provide the immune system with an alternative protective mechanism."

According to them, these cells may be recruited to help in the immune response at interfaces such as the skin or mucosae, where the rapid elimination of infected cells is crucial.

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Story Source:

The above story is reprinted from materials provided by RIKEN.

Note: Materials may be edited for content and length. For further information, please contact the source cited above.


Journal Reference:

  1. Daniel Mucida, Mohammad Mushtaq Husain, Sawako Muroi, Femke van Wijk, Ryo Shinnakasu, Yoshinori Naoe, Bernardo Sgarbi Reis, Yujun Huang, Florence Lambolez, Michael Docherty, Antoine Attinger, Jr-Wen Shui, Gisen Kim, Christopher J Lena, Shinya Sakaguchi, Chizuko Miyamoto, Peng Wang, Koji Atarashi, Yunji Park, Toshinori Nakayama, Kenya Honda, Wilfried Ellmeier, Mitchell Kronenberg, Ichiro Taniuchi, Hilde Cheroutre. Transcriptional reprogramming of mature CD4 helper T cells generates distinct MHC class II?restricted cytotoxic T lymphocytes. Nature Immunology, 2013; DOI: 10.1038/ni.2523

Note: If no author is given, the source is cited instead.

Disclaimer: This article is not intended to provide medical advice, diagnosis or treatment. Views expressed here do not necessarily reflect those of ScienceDaily or its staff.

Source: http://feeds.sciencedaily.com/~r/sciencedaily/~3/5C-UYWXEMIY/130120145844.htm

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World's best big wave surfers compete at Mavericks

Ryan Augenstein competes during the third heat of the Mavericks Surf Competition in Half Moon Bay, Calif., Sunday, Jan. 20, 2013. (AP Photo/Marcio Jose Sanchez)

Ryan Augenstein competes during the third heat of the Mavericks Surf Competition in Half Moon Bay, Calif., Sunday, Jan. 20, 2013. (AP Photo/Marcio Jose Sanchez)

Spectators cheer on Nathan Fletcher, left, and Rusty Long as they compete during a semifinal heat at the Mavericks Invitational big wave surf contest in Half Moon Bay, Calif., Sunday, Jan. 20, 2013. (AP Photo/Marcio Jose Sanchez)

Colin Dwyer competes during heat 4 of the Mavericks Invitational big wave surf contest in Half Moon Bay, Calif., Sunday, Jan. 20, 2013. (AP Photo/Marcio Jose Sanchez)

A remote-controlled toy surfer goes through the water during the Mavericks Invitational big wave surf contest in Half Moon Bay, Calif., Sunday, Jan. 20, 2013. (AP Photo/Marcio Jose Sanchez)

Grant "Twiggy" Baker competes during the fourth heat of the Mavericks Invitational big wave surf contest in Half Moon Bay, Calif., Sunday, Jan. 20, 2013. (AP Photo/Marcio Jose Sanchez)

HALF MOON BAY, Calif. (AP) ? As swells lumbered across the Pacific toward Northern California, nearly two dozen of the world's best big wave surfers went to meet them on Sunday, a half-mile offshore at the famed surfing break known as Mavericks.

For the first time since 2010, the Mavericks Invitational surf contest ? which requires wave faces of at least 20 feet ? got under way at the bone-crushing break that has claimed the lives of two expert big wave surfers.

Wave forecasters this week saw an excellent mixture of swell, wind, tide and sunny skies, though the waves Sunday morning were not quite as big as expected.

Contestant Tyler Smith said there were long waits between sets of waves, but there were some good rides for the patient.

"You just have to be in the right place at the right time," said Smith.

Once the decision was made to run the contest, the call went out to the surfers, giving them a couple of days to pack their boards and wetsuits, and hop a plane.

Surfing the wave at Mavericks is a feat that takes athletic skill, experience and nerve.

The swells travel through deep water for five days before hitting a small, finger-like section of shallow reef that juts out into the sea.

When the swell meets the reef, the wave jumps upward and crashes back down with a fury, eventually washing through a section of craggy rocks.

The takeoff is often so steep that the surfers' big-wave "gun" surfboards leave the wave face, forcing the surfers to land near the bottom and make a quick turn before being pummeled by the wave's lip.

The spot ? named after the dog of Jeff Clark, who is credited with being the first to surf Mavericks ? has earned a nasty reputation. Mark Foo, a legendary big-wave surfer from Hawaii, died while surfing Mavericks in 1994. In 2011, another seasoned waterman, Sion Milosky, died there just weeks after another surfer nearly drowned.

This year's contest will be different: spectators are forbidden access to the beach or bluffs. After a large set of waves crashed into the crowd in 2010, injuring dozens, local officials barred crowds from congregating there.

Also, people congregating on the bluffs and along tide pools during previous contests caused environmental damage.

This year organizers have set up a festival at a nearby hotel, featuring a large screen that will broadcast the surfing live. The surfers will hold the awards ceremony there at the end of the contest.

The Coast Guard has issued a high surf advisory for the weekend, and is warning people throughout the region to watch for "sneaker waves" and other hazards.

___

Follow Jason Dearen on Twitter: http://www.twitter.com/JHDearen

Associated Press

Source: http://hosted2.ap.org/APDEFAULT/3d281c11a96b4ad082fe88aa0db04305/Article_2013-01-20-Big%20Wave%20Contest/id-540ead88230347759921a9d9d8dd84ca

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